Data Release Policy

We aim to make sequence data rapidly and broadly available to the scientific community as a community resource. We intend to publish the work of this project in a timely fashion, and we welcome collaborative interactions on the project and analyses.

figshare (subject to the policy above).

Contact us if you have questions or need help with the data. The corresponding metadata is outlined below.

Zebrahub's sequencing and imaging data can be downloaded from different sources:

If you use any of these datasets for your own research, please cite the main zebrahub publication:

Zebrahub - Multimodal Zebrafish Developmental Atlas Reveals the State Transition Dynamics of Late Vertebrate Pluripotent Axial Progenitors. Lange et al. BioRxiv 2023.

Note: In the following we list the datasets and associated metadata. The image datasets are in OME-Zarr format and carry their own specific metadata.

List of scRNAseq datasets:

List of imaging datasets:

Note: Imaging datasets are in OME-zarr format wich contains all relevant metadata.