Credits

Conceptualization: Loïc A. Royer, Merlin Lange, Angela Oliveira Pisco, Alejandro Granados

Methodology:  Merlin Lange, Shruthi VijayKumar, Alejandro Granados, Yang-Joon Kim

Cell-type annotation: Merlin Lange, Shruthi VijayKumar, Xiang Zhao, Keir Balla, Adrian Jacobo, Rachel Banks, Tiger Lao, Angela Oliveira Pisco

Data Analysis: Alejandro Granados, Sarah Ancheta, Aaron McGeever, Hirofumi Kobayashi, Sreejith Santhosh

Software: Hirofumi Kobayashi, Robert Haase, Ahmet Can Solak

Instruments: Bin Yang, Yang Liu

Data portal: Kyle Awayan, Samuel D’Souza

Experiments: Merlin Lange, Shruthi VijayKumar, Michael Borja

Sequencing: Sheryl Paul, Honey Mekonen, Angela Detweiler, Norma Neff

Data Curation: Merlin Lange, Alejandro Granados, Loïc A. Royer

3D Visualizations: Hirofumi Kobayashi, Kyle Awayan, Samuel D’Souza, Lachlan W. Whitehead

Mentorship: Sandra Schmid, Olivier Pourquie

Supervision: Loïc A. Royer, Angela Oliveira Pisco, Norma Neff, Mattia Serra

Organization: Loïc A. Royer, Merlin Lange

Funding: Chan Zuckerberg Biohub

Acknowledgements

Thanks to the CZI Science Tech team for creating CZ CELLxGENE, the tool that makes the visualization of this research possible. For the 3D rotating UMAPs on this website, we use the deck.gl library. The static renderings of 3D rotating UMAPs and other animations of 3D+t microscopy data were made using the napari viewer and in particular the napari animation plugin. We also used spimagine for some of the microscopy renderings. Some of the figures, and all images of zebrafish embryos and larvae on this website, were created with BioRender. Manual curation of cell tracks was done using mastodon. Some of the scRNAseq analysis was done using scanpy.

Finally, we thank the Chan Zuckerberg Biohub and its donors for funding this work.